Sunday, July 31, 2011

I Finally Have An Entire Fundulus Mitochondrial cyt-b Gene Sequence

Lance and Anthony at IXG came up with a third sequencing primer for getting the entire 1140 base cytochrome-b gene from several Fundulus species. The one below is from a longnose killifish, F. similis, from St. Joe Beach, Florida. It's the first of my batch of five. I've stitched it together from three overlapping sequences from the three different primers. And, it's published here first!

ATGGCAAACCTTCGAAAAACCCACCCCCTTCTAAAAATTGCAAACGACGC
TTTAGTGGACCTACCAGCCCCTGTAAATATTTCCGTATGATGAAACTTTG
GTTCCCTATTAGGCTTATGCTTAATTGCCCAAATTTTAACAGGATTATTT
TTAGCTATACATTATACTTCTGACATTTCCACAGCCTTCTCATCTGTTGC
ACACATCTGCCGAGATGTAAATTACGGCTGATTAATTCGTAATATACACG
CTAACGGAGCCTCTTTCTTTTTTATTTGTATTTATATTCATATTGGGCGA
GGCTTATATTATGGATCGTATCTTTATAAAGAAACATGAAACGTAGGGGT
TATCCTTCTTCTCCTAGTTATGATGACTGCTTTCGTTGGATACGTTCTTC
CCTGAGGACAAATATCCTTCTGAGGGGCCACCGTTATTACCAATCTCCTG
TCCGCCGTCCCTTACGTAGGAGATGCACTGGTACAATGAATTTGAGGGGG
TTTCTCAGTAGATAATGCTACACTAACCCGATTCTTTGCCTTCCATTTCC
TCTTCCCATTTGTCGTAGCAGCTGCTACTATAGTACACTTAATTTTCCTT
CATGAAACAGGATCTAATAATCCAACGGGTTTAAACTCCGATGCAGATAA
AATTTCATTCCACCCTTACTTTTCTTACAAGGATATTCTAGGTTTTGCCC
TTCTTCTAGCAGCCTTAATTTCTTTAGCCTTATTTTCCCCTAATCTCCTT
GGAGATCCTGATAACTTTACACCAGCCAACCCTTTAGTTACTCCCCCTCA
TATCAAGCCTGAATGATATTTCCTTTTTGCCTATGCTATTCTTCGATCCA
TTCCTAATAAACTAGGAGGAGTATTAGCCTTATTAGCATCTATTCTTATT
CTTATGGTAGTTCCTATTCTTCATACATCTAAACAACGAAGCCTTACCTT
CCGACCTCTAACCCAATTCCTATTTTGACTTCTAGTAGCAGATGTTATAA
TTCTTACCTGAATTGGTGGTATACCTGTAGAACACCCCTTCGTAATTATT
GGTCAGGTTGCTTCCTTCCTCTATTTTTCCCTATTCCTGTTTCTCTCTCC
TGCCGCAGCATGATTAGAGAATAAAGTCCTTGGATGATAA

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